Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHOX2B

Cell type

Cell type Class
Neural
Cell type
IMR-32
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
IMR32_PHOX2B_ChIPSeq
cell line
IMR32
cell type
Neuroblastoma
genotype/variation
siCtrl
chip antibody
PHOX2B (santa cruze, sc-376997 X)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
38939267
Reads aligned (%)
91.5
Duplicates removed (%)
16.0
Number of peaks
2882 (qval < 1E-05)

hg19

Number of total reads
38939267
Reads aligned (%)
91.1
Duplicates removed (%)
17.0
Number of peaks
2890 (qval < 1E-05)

Base call quality data from DBCLS SRA